Update History
  • Added support to reduce node overlaps in network layout (09/15/2017);
  • Updated the method for computing minimum network - which can obtain similar minimum network from large-scale network in a short time (07/10/2017);
  • Enhanced heatmap resolutions and network node highlighting (06/01/2017);
  • Fixed name mapping issue with A. thaliana (02/27/2017);
  • Fixed node name display issue for fruitfly and C. elegans (02/06/2017);
  • Fixed ID mapping issue with STRING database (01/23/2017);
  • Fixed the issue with SIF file generation (01/16/2017);
  • Fixed issue with PPI mapping for fruitfly (01/10/2017);
  • Added support for Venn diagram visual analytics (12/9/2016);
  • Added support for gene-TF interactions based on ENCODE, JASPAR and ChEA (12/9/2016);
  • Added support for gene-chemical interactions (12/8/2016);
  • Added support for data filtering step in differential expression analysis (12/6/2016)
  • Added support for protein-drug interactions (12/5/2016)
  • Added VSN normalization support for microarray data (11/25/2016)
  • Both Network and Heatmap now support Retina display (11/20/2016)
  • Enhanced clustering analysis for heatmap visualization (11/18/2016);
  • Added support for miRNA-target gene interaction network. (11/15/2016);
  • Added support for t-SNE clustering 3D visualization. (11/10/2016);
  • Detailed DE result table is now available for single gene expression data. (11/05/2016);
  • Enhanced interface for differential expression analysis. (11/05/2016);
  • NetworkAnalyst now supports limma, edgeR and DEseq2 for RNAseq data analysis. (10/28/2016);
  • Added support for two community detection algorithms (Infomap & Label Propagation) (09/28/2016);
  • Added support for eight new species including three animals (zebrafish, cow & chicken), two bacteria (E. coli & B. subtilis), two parasites (T. brucei & P. falciparum) and one plant (A. thaliana) (09/22/2016);
  • Added support for PPI data from STRING (09/12/2016);
  • Added support for node edge coloring (08/16/2016);
  • Updated major data I/O functions for better performance (08/05/2016);
  • Minor bug fix and code refactoring for memory efficiency (07/20/2016);
  • Enhanced support for network color gradient to reflect expression level (07/18/2016);
  • Updated FAQs (#25) on how to generate a high-resolution network image (07/15/2016);
  • Updated SVG Export to fully capture the network view (07/12/2016);
  • Updated network view and layout features for better visualization (07/8/2016);
  • Updated the web framework for better performance (07/07/2016);
  • Added support for motif (transcriptional factor binding sites, miRNA target sites, etc) enrichment analysis for human and mouse (02/11/2016);
  • Added support for batch selection-and-dragging nodes using mouse (01/05/2016);
  • Enhanced network visualization for retina display (12/21/2015);
  • Enhanced features for heatmap analysis support (10/26/2015);
  • Added EdgeR support for analysis of single RNAseq count data (10/15/2015)
  • Added support for downloading coordinates file in 3D PCA visualization (09/15/2015)
  • Added support for batch effect adjustment (Combat) (07/28/2015)
  • Added support for interactive 3D PCA visualization (07/27/2015)
  • NetworkAnalyst now allows statisitcal gene expression analysis or meta-analysis for any organism (07/24/2015)
  • Added recovery messages to allow user to switch to a different server (07/24/2015)
  • Users can now download and then re-upload the merged data in meta-analysis module (07/23/2015)
  • Updated the normalization interface with more options (07/08/2015)
  • Added support for gene symbols in all modules (07/06/2015)
  • Minor bug fixes for heatmap rendering issue (06/25/2015)
  • Added support for two microarray platforms Affymetrix Mouse Gene 1.0 ST Array and Affymetrix GeneChip Mouse Genome 430 2.0 (06/21/2015)
  • We are testing our mirror site (mirror.networkanalyst.ca) on Google Cloud. Traffics will be distributed between the two websites. Let us know if you experience any issue (06/11/2015)
  • Upgraded the network visualization framework for better performance (06/05/2015);
  • Fixed the chord diagram rendering bug (06/04/2015);
  • Nature Protocols on NetworkAnalyst is now released (05/07/2015);
  • Added more data normalization options and updated FAQs (05/06/2015);
  • Now supports drag-and-drop current highlighted nodes (03/16/2015);
  • Added gene search support for the meta-analysis result table (03/12/2015);
  • Added support for new human interactome data by Rolland T. et al (02/20/2015);
  • NetworkAnalyst now supports data from Yeast (S. cerevisiae) (02/18/2015);
  • Added KEGG pathway analysis support for C. elegans and Fruitfly (02/16/2015);
  • You can download network as SVG image (02/02/2015);
  • Users can now control the order in specific comparison (01/27/2015);
  • Added a toggle highlight function for chord diagram (01/09/2015);
  • Added support for batch selection in network view (12/08/2014);
  • Updated tutorials and FAQs (12/01/2014);
  • Added support for computing the difference and intersection in Chord diagram (11/25/2014);
  • Users can now drag a node and its dependant nodes simultaneously (11/18/2014);
  • Added support to Select all from Overview to Focus view in heatmap view (11/10/2014);
  • Added support to resume analysis from a saved session file; (11/05/2014)
  • Added support to save SVG image for chord diagram;(11/03/2014)
  • You can now manually drag-and-drop individual nodes in network view; (10/15/2014)
  • NetworkAnalyst now supports data from D. melanogaster (fruit fly); (10/3/2014)
  • Users can now compute intersections of any datasets in Chord diagram; (09/25/2014)
  • NetworkAnalyst now supports data from C. elegans; (09/15/2014)
  • Enhanced support for single gene network analysis; (09/10/2014)
  • Added interactive chord diagram support for comparison of multiple datasets; (09/02/2014)
  • Updated the Neo4j graph database; (08/28/2014)
  • Updated interface for network visualzation; (08/25/2014)
  • Added interactive heatmap support for visualizing expression profiles of single or multiple datasets; (08/20/2014)
  • Fixed a minor bug for network visualization; (08/15/2014)
  • Added statistical methods for meta-analysis; (08/10/2014)
  • Users can now use NetworkAnalyst from InnateDB; (07/20/2014)
  • Merged interface for processing single and multiple expression datasets; (06/30/2014)
  • Updated tutorials and FAQs; (06/15/2014)
  • Added support for multiple gene lists; (06/14/2014)
  • Improved interface for Network Builder and performance optimization; (06/12/2014)
  • Added support for white background and edge thickness adjustment (05/20/2014)
  • Updated interface for network builder (04/30/2014)
  • Added Trim function to compute minimum network connecting all seed proteins (04/15/2014)
  • Added support for official gene symbol lists (02/20/2014)
  • NetworkAnalyst official release (01/30/2014)
  • NetworkAnalyst website is ready for testing (12/10/2013)
Processing ....
Your session is about to expire!

You will be logged off in seconds.

Do you want to continue your session?