NetworkAnalyst

News & Updates

Please reach us through OmicsForum. Use invite code: xialab_omics!
NetworkAnalyst accepts gene/protein list for biological network analysis. Please use ExpressAnalyst for comprehensive transcriptomics data analysis, and ProteoAnalyst for proteomics data analysis;
Added edge context information for STRING, IntAct, and OmniPath PPI (11/27/2025)
Added OmniPath database covering PPI, miRNA-gene, and TF-gene interactions (11/24/2025)
Updated IntAct PPI database for several new species (11/15/2025);
Updated STRING, DrugBank, CTD (Chemical-gene), TarBase, and DifferentialNet (Tissue PPI) databases (10/15/2025);

Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) "NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis" Nucleic Acids Research 47 (W1): W234-W241.
Xia J, Gill E, and Hancock REW (2015) "NetworkAnalyst for Statistical, Visual and Network-based Approaches for Meta-analysis of Expression Data" Nature Protocols 10, 823–844
Xia J, Benner MJ, and Hancock REW (2014) "NetworkAnalyst - integrative approaches for protein–protein interaction network analysis and visual exploration" Nucleic Acids Res. 42 (W1): W167-W174. (PPI data analysis and visualization)
Xia, J., Lyle, N.H., Mayer, M., Pena, O.M. and Hancock, R.E.W. (2013) “INVEX - a web-based tool for integrative visualization of expression data”. Bioinformatics 29 (24), 3232-3234 (gene expression data analysis)
Xia, J., Fjell, C.D., Mayer, M., Pena, O.M., Wishart, D.S. and Hancock, R.E.W. (2013) “INMEX - a web-based tool for integrative meta-analysis of expression data”. Nucleic Acids Research 41, W63-W70. (meta-analysis)