Starting from a list of gene IDs with optional expression values
Starting from a single count table (RNAseq) or intensity table (microarray)
Starting with several gene expression tables for meta-analysis
Uploading RNAseq fastq files to our Galaxy server for mapping & quantification
Starting with a network file (sif, graphml, json)

News & Updates

  • Updated R from 3.5.1 to the latest version (3.6.1) (10/16/2019);
  • The volcano plot now supports enrichment analysis against user defined gene sets (10/07/2019);
  • Fixed the broken link in meta-analysis result download page (09/18/2019);
  • Bug fixes - GSEA and uploading multiple list files are working now (06/24/2019);
  • Enhanced graphML parsing for network file upload (05/31/2019);
  • Updated web framework to PrimeFaces 7.0 (05/18/2019);
  • Updated KEGG pathways for all 17 species (04/30/2019);
  • Fixed the issue with PCA 3D visual analytics (04/05/2019);
  • Fixed the issue with DE analysis for species not in the list of the 17 organisms (03/28/2019);
  • Our NetworkAnalyst 3.0 manuscript is accepted by Nucleic Acids Research! (03/23/2019);
  • Added support for WormBase ID for C. elegans (03/22/2019);
  • Users can now upload gene list file(s) in addition to direct copy-and-paste (03/18/2019);
  • Fixed issue with box plot display when clicking a data point in volcano plot (03/12/2019);
  • Fixed issue with meta-data upload and table display (03/06/2019);
  • Updated FAQs and Tutorials based on new features (02/01/2019);
  • Added support for heatmap visual analytics for gene lists (01/23/2019);
Read more ......

Please Cite

  • Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) "NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis" Nucleic Acids Research (doi:10.1093/nar/gkz240)
  • Xia J, Gill E, and Hancock REW (2015) "NetworkAnalyst for Statistical, Visual and Network-based Approaches for Meta-analysis of Expression Data" Nature Protocols 10, 823–844
  • Xia J, Benner MJ, and Hancock REW (2014) "NetworkAnalyst - integrative approaches for protein–protein interaction network analysis and visual exploration" Nucl. Acids Res. 42 (W1): W167-W174. (PPI data analysis and visualization)
  • Xia, J., Lyle, N.H., Mayer, M., Pena, O.M. and Hancock, R.E.W. (2013) “INVEX - a web-based tool for integrative visualization of expression data”. Bioinformatics 29 (24), 3232-3234 (gene expression data analysis)
  • Xia, J., Fjell, C.D., Mayer, M., Pena, O.M., Wishart, D.S. and Hancock, R.E.W. (2013) “INMEX - a web-based tool for integrative meta-analysis of expression data”. Nucleic Acids Research 41, W63-W70. (meta-analysis)
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