NetworkAnalyst

-- comprehensive gene expression profiling & network visual analytics

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Starting from a list of gene IDs with optional expression values

Starting from a single count table (RNAseq) or intensity table (microarray)

Starting with several gene expression tables for meta-analysis

Uploading raw RNAseq files (any species) for mapping & quantification

Starting with a network file (sif, graphml, json)

News & Updates

The gene expression analysis and meta-analysis modules are now migrated to the ExpressAnalys (03/14/2022);
Upgraded R version to 4.1.3 and system update (05/14/2022);
Fixed the issue associated with empty columns in the abundance table (01/28/2022);
Users can now perform GO analysis for any non-model species profiled by Seq2Fun (01/20/2022);
Added support for Seq2Fun output to enable streamlined analysis of gene expression data from any species (01/19/2022);
Migrating raw RNAseq processing from Galaxy to EcoOmicsAnalyst for better interface and support (01/07/2022);
Added support for Hyalella azteca (12/09/2021);

Read more ......

Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) "NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis" Nucleic Acids Research 47 (W1): W234-W241.
Xia J, Gill E, and Hancock REW (2015) "NetworkAnalyst for Statistical, Visual and Network-based Approaches for Meta-analysis of Expression Data" Nature Protocols 10, 823–844
Xia J, Benner MJ, and Hancock REW (2014) "NetworkAnalyst - integrative approaches for protein–protein interaction network analysis and visual exploration" Nucleic Acids Res. 42 (W1): W167-W174. (PPI data analysis and visualization)
Xia, J., Lyle, N.H., Mayer, M., Pena, O.M. and Hancock, R.E.W. (2013) “INVEX - a web-based tool for integrative visualization of expression data”. Bioinformatics 29 (24), 3232-3234 (gene expression data analysis)
Xia, J., Fjell, C.D., Mayer, M., Pena, O.M., Wishart, D.S. and Hancock, R.E.W. (2013) “INMEX - a web-based tool for integrative meta-analysis of expression data”. Nucleic Acids Research 41, W63-W70. (meta-analysis)

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